About

Publications

Using the EU-OPENSCREEN fragment library: Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking

Publication Date: April 14, 2021

Fragment-based screening is an approach to identify building blocks of the future drug molecule, observing how they interact with the protein under study, contextualizing those interactions, and providing starting points for molecules that directly influence the biology of the protein. New research published by EU-OPENSCREEN collaborators at the XChem platform at Diamond performed a crystallographic fragment screen of the macrodomain part of the Nsp3 gene product that SARS-CoV-2 uses to suppress the host cell’s natural antiviral response. This study discovered 234 fragment compounds that directly bind to sites of interest on the surface of the protein, and that can be used by researchers and pharmaceutical companies to design compounds that could be developed into antiviral drugs. 

DOI 10.1126/sciadv.abf8711

 

 

Using the EU-OPENSCREEN bioactives library: Identification of Inhibitors of SARS-CoV-2 3CL-Pro Enzymatic Activity Using a Small Molecule in Vitro Repurposing Screen

Publication Date: March 11, 2021

Authors: Maria Kuzikov*, Elisa Costanzi, Jeanette Reinshagen, Francesca Esposito, Laura Vangeel, Markus Wolf, Bernhard Ellinger, Carsten Claussen, Gerd Geisslinger, Angela Corona, Daniela Iaconis, Carmine Talarico, Candida Manelfi, Rolando Cannalire, Giulia Rossetti, Jonas Gossen, Simone Albani, Francesco Musiani, Katja Herzog, Yang Ye, Barbara Giabbai, Nicola Demitri, Dirk Jochmans, Steven De Jonghe, Jasper Rymenants, Vincenzo Summa, Enzo Tramontano, Andrea R. Beccari, Pieter Leyssen, Paola Storici, Johan Neyts, Philip Gribbon, and Andrea Zaliani
   

Abstract

Compound repurposing is an important strategy for the identification of effective treatment options against SARS-CoV-2 infection and COVID-19 disease. In this regard, SARS-CoV-2 main protease (3CL-Pro), also termed M-Pro, is an attractive drug target as it plays a central role in viral replication by processing the viral polyproteins pp1a and pp1ab at multiple distinct cleavage sites. We here report the results of a repurposing program involving 8.7 K compounds containing marketed drugs, clinical and preclinical candidates, and small molecules regarded as safe in humans. We confirmed previously reported inhibitors of 3CL-Pro and have identified 62 additional compounds with IC50 values below 1 μM and profiled their selectivity toward chymotrypsin and 3CL-Pro from the Middle East respiratory syndrome virus. A subset of eight inhibitors showed anticytopathic effect in a Vero-E6 cell line, and the compounds thioguanosine and MG-132 were analyzed for their predicted binding characteristics to SARS-CoV-2 3CL-Pro. The X-ray crystal structure of the complex of myricetin and SARS-Cov-2 3CL-Pro was solved at a resolution of 1.77 Å, showing that myricetin is covalently bound to the catalytic Cys145 and therefore inhibiting its enzymatic activity.

https://doi.org/10.1021/acsptsci.0c00216

Academic collaborative models fostering the translation of physiological in vitro systems from basic research into drug discovery

Published: March 4, 2021

Authors: AlessandraSilvestri1, FranciscaVicente2,  María J.Vicent3,  BahneStechmann1,  WolfgangFecke1

1 EU-OPENSCREEN ERIC, Berlin, Germany

2 Fundación MEDINA, Granada, Spain

3 Polymer Therapeutics Lab and Screening Platform, Príncipe Felipe Research Centre, Valencia, Spain

DOI:https://doi.org/10.1016/j.drudis.2021.02.024
    

Abstract

In this review, we provide an overview of recent publications in the field of HTS with complex cellular models, explain the potential of these approaches, and highlight gaps that still need to be addressed. Moreover, we bring the attention of cellular biology and medicinal chemistry groups to collaborative initiatives, such as EU-OPENSCREEN ERIC, which can efficiently support researchers from academia and industry to easily access such complex assay formats in state-of-the-art chemical biology platforms. Such collaborative approaches can accelerate the drug discovery process and allow for a more efficient development of new technologies and their adaptation onto screening platforms. This will lead to the production of more physiologically relevant results that, in turn, can be more easily translated into clinical therapies.

The success of preclinical drug discovery strongly relies on the ability of experimental models to resemble human pathophysiology. The number of compounds receiving approval for clinical use is limited, and this has led to the development of more physiologically relevant cellular models aimed at making preclinical results more prone to be successfully translated into clinical use. In this review, we summarize the technologies available in the field of high-throughput screening (HTS) using complex cellular models, and describe collaborative initiatives, such as EU-OPENSCREEN, which can efficiently support researchers to easily access state-of-the-art chemical biology platforms for improving the drug discovery process and allow for a more efficient development of new technologies and their adaptation onto screening platforms. This will lead to the production of more physiologically relevant results that, in turn, can be more easily translated into clinical therapies.